PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG536700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 231aa    MW: 24246.2 Da    PI: 5.7304
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG536700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS82.38.2e-2663225197374
                 GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                            gEal+V+l+++l +        ++er ++L+ v++l+P++vv++e +a   +++ + +f+  le  + +++s++a +    + r   E
  Pavir.9NG536700.1.p  63 AAGEALVVCLQFRLGHAA------ADERADILSKVRGLNPELVVLSELDAGG-DGTAAGEFTARLELLWRFLESTSAAF----KGRDGEE 141
                          349*********999997......455789*****************99986.88889*****************8886....5555555 PP

                 GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          r+ll+ e+   v++  a      e    Wrer+ +aGF++++++ +a+++a++llrk++ +++++     g++ l Wk++p+ ++S Wr
  Pavir.9NG536700.1.p 142 RRLLEAEAGTSVTADAAG-----EGRDAWRERMAAAGFEEAAFGGEAVESARSLLRKYDgGWEMSASGAAGAVALRWKGQPVSFCSLWR 225
                          566666666666666665.....66669*******************************888888888999999**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.361204IPR005202Transcription factor GRAS
PfamPF035142.8E-2363225IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKPRSGNQST PTRHESRDPT VIIGSPPFPS ATSAMLNTRL TSINLHLAIS RAGSLDSVHG  60
FAAAGEALVV CLQFRLGHAA ADERADILSK VRGLNPELVV LSELDAGGDG TAAGEFTARL  120
ELLWRFLEST SAAFKGRDGE ERRLLEAEAG TSVTADAAGE GRDAWRERMA AAGFEEAAFG  180
GEAVESARSL LRKYDGGWEM SASGAAGAVA LRWKGQPVSF CSLWRPACSG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280151e-158KJ728015.1 Zea mays clone pUT6151 GRAS transcription factor (GRAS74) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656755.11e-100PREDICTED: nodulation-signaling pathway 1 protein-like
TrEMBLA0A096RS011e-100A0A096RS01_MAIZE; Uncharacterized protein
STRINGGRMZM2G110067_P012e-99(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-37GRAS family protein